Edit Entry | Edit CV

Anne G Hoen, PhD

Title(s)
Associate Professor of Epidemiology
Associate Professor of Biomedical Data Science
Associate Professor of Microbiology and Immunology

Department(s)
Epidemiology
Biomedical Data Science
Microbiology and Immunology

Programs
Molecular and Cellular Biology Graduate Programs
Quantitative Biomedical Sciences

Websites
https://www.hoenlab.org

Contact Information

Dartmouth-Hitchcock Medical Center
One Medical Center Drive
HB 7927
Lebanon NH 03756

Email: Anne.G.Hoen@Dartmouth.edu


Professional Interests

Dr. Hoen's research focus is on the development of the microbiome in infants and children, and the associations between environmental and dietary exposures, the microbiome, and risk for infectious and other diseases. She has a broad interest in the predictors of disease risk and microbial colonization dynamics in human populations and the environment as reflected in microbial genetic sequence variation and health informatics streams over space and time. Interdisciplinary approaches used in her research include spatial and time-series statistics, population genetics and novel disease surveillance methodologies along with tools from the fields of microbial ecology, molecular epidemiology and landscape epidemiology.

Rotations and Thesis Projects

Development of novel computational methods for studying the human microbiota
Investigating the environmental drivers of infant intestinal microbiome development
Associations between patterns of infant intestinal microbiome establishment and health outcomes in children
Functional characterization of the developing infant gut microbiota using metabolomics

Grant Information

K01LM011985: Bioinformatics strategies for early life microbiomics
R01LM012723: Multi-omic functional integration using networks

Courses Taught

QBS 136 Applied Epidemiologic Methods

Biography

Dr. Hoen completed her PhD in epidemiology and public health at Yale University and received post-doctoral training at Harvard Medical School. She has broad training in biostatistics, epidemiology and public health with research experience in the evaluation of interventions, understanding infectious disease emergence and spread, and evaluating associations between the microbiome and human health. Her research uses advanced statistical methods as well as informatics and complex systems approaches. Past studies include modeling the timing and spread of influenza to estimate the effects of interventions targeting children, modeling the evolutionary ecology of the Lyme disease agent, Borrelia burgdorferi and characterizing the initial development of the human microbiome in early life and its associations with common exposures and infectious outcomes.


Selected Publications

 

Early-life arsenic exposure modulates the developing microbiome in a rural cohort.
Laue HE, Kook D, Khatchikian C, Coto SD, Jackson BP, Palys TJ, Peacock JL, Karagas MR, O'Toole GA, Hoen AG, Madan JC
Environ Res. 2026 Feb 15;291:123588. doi: 10.1016/j.envres.2025.123588. Epub 2025 Dec 17.
PMID: 41418855

Increased dose of H1N1 pandemic influenza vaccine during pregnancy improves immunity in mothers and infants.
Kansara D, Kosikova M, Milletich PL, Zhou J, Coughlan L, Zens MS, Swamy G, Hoen AG, Xie H, Ackerman ME, Pasetti MF, DMID 09-0072 Clinical Study Group
medRxiv. 2025 Nov 19; pii: 2025.11.18.25340497. doi: 10.1101/2025.11.18.25340497. Epub 2025 Nov 19.
PMID: 41332801

Maternal Diet Quality in Pregnancy and Human Milk Extracellular Vesicle and Particle microRNA.
Muse ME, Wang Y, Gilbert-Diamond D, Armstrong DA, Hoen AG, Romano ME, Gui J, Palys TJ, Kolling FW, Christensen BC, Karagas MR, Howe CG
Epigenet Rep. 2025;3(1):1-10. doi: 10.1080/28361512.2025.2508883. Epub 2025 May 30.
PMID: 40631350

Optimizing Protocols for MicroRNA Profiling of Infant and Toddler Stool.
Armstrong DA, Soucy SM, Muse ME, Kolling FW, Trask HW, Howell AL, Laue HE, Hoen AG, Gui J, Christensen BC, Madan JC, Karagas MR, Howe CG
bioRxiv. 2025 Apr 3; pii: 2025.04.01.646630. doi: 10.1101/2025.04.01.646630. Epub 2025 Apr 3.
PMID: 40236248

Maternal diet quality and circulating extracellular vesicle and particle miRNA during pregnancy.
Muse ME, Wang Y, Gilbert-Diamond D, Armstrong DA, Hoen AG, Romano ME, Gui J, Palys TJ, Kolling FW, Christensen BC, Karagas MR, Howe CG
Eur J Nutr. 2025 Feb 1;64(2):75. doi: 10.1007/s00394-025-03589-x. Epub 2025 Feb 1.
PMID: 39891736

Prospective association of the infant gut microbiome with social behaviors in the ECHO consortium.
Laue HE, Bonham KS, Coker MO, Moroishi Y, Pathmasiri W, McRitchie S, Sumner S, Hoen AG, Karagas MR, Klepac-Ceraj V, Madan JC, program collaborators for Environmental influences on Child Health Outcomes
Mol Autism. 2024 May 17;15(1):21. doi: 10.1186/s13229-024-00597-2. Epub 2024 May 17.
PMID: 38760865

Patterns of infant fecal metabolite concentrations and social behavioral development in toddlers.
Laue HE, Bauer JA, Pathmasiri W, Sumner SCJ, McRitchie S, Palys TJ, Hoen AG, Madan JC, Karagas MR
Pediatr Res. 2024 Jul;96(1):253-260. doi: 10.1038/s41390-024-03129-z. Epub 2024 Mar 20.
PMID: 38509226

Maternal-Infant Factors in Relation to Extracellular Vesicle and Particle miRNA in Prenatal Plasma and in Postpartum Human Milk.
Muse ME, Armstrong DA, Hoen AG, Gilbert-Diamond D, Gui J, Palys TJ, Kolling FW, Christensen BC, Karagas MR, Howe CG
Int J Mol Sci. 2024 Jan 26;25(3) doi: 10.3390/ijms25031538. Epub 2024 Jan 26.
PMID: 38338815

Metabolomic data presents challenges for epidemiological meta-analysis: a case study of childhood body mass index from the ECHO consortium.
Prince N, Liang D, Tan Y, Alshawabkeh A, Angel EE, Busgang SA, Chu SH, Cordero JF, Curtin P, Dunlop AL, Gilbert-Diamond D, Giulivi C, Hoen AG, Karagas MR, Kirchner D, Litonjua AA, Manjourides J, McRitchie S, Meeker JD, Pathmasiri W, Perng W, Schmidt RJ, Watkins DJ, Weiss ST, Zens MS, Zhu Y, Lasky-Su JA, Kelly RS
Metabolomics. 2024 Jan 24;20(1):16. doi: 10.1007/s11306-023-02082-y. Epub 2024 Jan 24.
PMID: 38267770

Identifying stationary microbial interaction networks based on irregularly spaced longitudinal 16S rRNA gene sequencing data.
Zhou J, Gui J, Viles WD, Chen H, Li S, Madan JC, Coker MO, Hoen AG
Front Microbiomes. 2024;3 pii: 1366948. doi: 10.3389/frmbi.2024.1366948. Epub 2024 Jun 2.
PMID: 40687607

View more publications on PubMed