COVID-19 Information

Publications

Complete List of Published Work in My Bibliography

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Recent Peer-reviewed Publications in Print

ScRNA-seq expression of IFI27 and APOC2 identifies four alveolar macrophage superclusters in healthy BALF.
Li X, Kolling FW, Aridgides D, Mellinger D, Ashare A, Jakubzick CV
Life Sci Alliance. 2022 Nov;5(11) pii: e202201458. doi: 10.26508/lsa.202201458. Epub 2022 Jul 12.
PMID: 35820705

Advancing Lung Immunology Research: An Official American Thoracic Society Workshop Report.
Rahimi RA, Cho JL, Jakubzick CV, Khader SA, Lambrecht BN, Lloyd CM, Molofsky AB, Talbot S, Bonham CA, Drake WP, Sperling AI, Singer BD
Am J Respir Cell Mol Biol. 2022 Jul;67(1):e1-18. doi: 10.1165/rcmb.2022-0167ST.
PMID: 35776495

LN Monocytes Limit DC-Poly I:C Induced Cytotoxic T Cell Response via IL-10 and Induction of Suppressor CD4 T Cells.
Tewari A, Prabagar MG, Gibbings SL, Rawat K, Jakubzick CV
Front Immunol. 2021;12:763379. doi: 10.3389/fimmu.2021.763379. Epub 2021 Oct 6.
PMID: 34691085

Redefining innate natural antibodies as important contributors to anti-tumor immunity.
Rawat K, Tewari A, Morrisson MJ, Wager TD, Jakubzick CV
Elife. 2021 Oct 5;10 pii: e69713. doi: 10.7554/eLife.69713. Epub 2021 Oct 5.
PMID: 34608861

Targeting resident macrophages in cancer.
Li X, Rawat K, Jakubzick CV
Nat Immunol. 2021 Sep;22(9):1078-1079. doi: 10.1038/s41590-021-01002-3.
PMID: 34354280

Editorial: Monocyte Heterogeneity and Function.
Ginhoux F, Mildner A, Gautier EL, Schlitzer A, Jakubzick C, Varol C, Bain C, Guermonprez P
Front Immunol. 2020;11:626725. doi: 10.3389/fimmu.2020.626725. Epub 2021 Jan 7.
PMID: 33488633

Human and Mouse Transcriptome Profiling Identifies Cross-Species Homology in Pulmonary and Lymph Node Mononuclear Phagocytes.
Leach SM, Gibbings SL, Tewari AD, Atif SM, Vestal B, Danhorn T, Janssen WJ, Wager TD, Jakubzick CV
Cell Rep. 2020 Nov 3;33(5):108337. doi: 10.1016/j.celrep.2020.108337.
PMID: 33147458

Localization of Macrophages in the Human Lung via Design-based Stereology.
Hume PS, Gibbings SL, Jakubzick CV, Tuder RM, Curran-Everett D, Henson PM, Smith BJ, Janssen WJ
Am J Respir Crit Care Med. 2020 May 15;201(10):1209-1217. doi: 10.1164/rccm.201911-2105OC.
PMID: 32197050

Improving the Quality and Reproducibility of Flow Cytometry in the Lung. An Official American Thoracic Society Workshop Report.
Tighe RM, Redente EF, Yu YR, Herold S, Sperling AI, Curtis JL, Duggan R, Swaminathan S, Nakano H, Zacharias WJ, Janssen WJ, Freeman CM, Brinkman RR, Singer BD, Jakubzick CV, Misharin AV
Am J Respir Cell Mol Biol. 2019 Aug;61(2):150-161. doi: 10.1165/rcmb.2019-0191ST.
PMID: 31368812

Dietary Lipids Differentially Shape Nonalcoholic Steatohepatitis Progression and the Transcriptome of Kupffer Cells and Infiltrating Macrophages.
McGettigan B, McMahan R, Orlicky D, Burchill M, Danhorn T, Francis P, Cheng LL, Golden-Mason L, Jakubzick CV, Rosen HR
Hepatology. 2019 Jul;70(1):67-83. doi: 10.1002/hep.30401. Epub 2019 Feb 27.
PMID: 30516830

Book Chapters

Jakubzick C. and Randolph G.J. Methods to study pulmonary dendritic cell migration. Chapter: Dendritic Cell Protocols, Methods Mol Biol. 2010

Redente EF, Jakubzick C, Martin TR, and Riches DW. Innate Immunity. Chapter: Murray and Nadels Textbook of Respiratory Medicine. 2015
Atif SM, Gibbings SL, Jakubzick CV. Isolation and Identification of Interstitial Macrophages from the Lungs Using Different Digestion Enzymes and Staining Strategies. Methods Mol Biol. 2018

Gibbings SL, Jakubzick CV. A consistent method to identify and isolate mononuclear phagocytes from human lung and lymph node, Type 2 Immunity. Methods Mol Biol. 2018

Gibbings SL, Jakubzick CV. A consistent method to identify and isolate mononuclear phagocytes from murine lung and lymph node, Lung Innate Immunity and Inflammation: Methods Mol Biol. Springer. 2018

Jakubzick C, Redente EF, Martin TR, and Riches DW. Innate Immunity. Chapter: Murray and Nadels Textbook of Respiratory Medicine. 2020

Dr. Jakubzick is part of the Immunological Genome Project Consortium

Malhotra D, Fletcher AL, Astarita J, Lukacs-Kornek V, Tayalia P, Gonzalez SF, Elpek KG, Chang SK, Knoblich K, Hemler ME, Brenner MB, Carroll MC, Mooney DJ, Turley SJ; The Immunological Genome Project Consortium. Transcriptional profiling of stroma from inflamed and resting lymph nodes defines immunological hallmarks. Nat Immunol. 2012 Apr 1.

Narayan K, Sylvia KE, Malhotra N, Yin CC, Martens G, Vallerskog T, Kornfeld H, Xiong N, Cohen NR, Brenner MB, Berg LJ, Kang J; The Immunological Genome Project Consortium. Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes. Nat Immunol. 2012 Apr 1.

Miller JC, Brown BD, Shay T, Gautier EL, Jojic V, Cohain A, Pandey G, Leboeuf M, Elpek KG, Helft J, Hashimoto D, Chow A, Price J, Greter M, Bogunovic M, Bellemare-Pelletier A, Frenette PS, Randolph GJ, Turley SJ, Merad M; The The Immunological Genome Project Consortium. Deciphering the transcriptional network of the dendritic cell lineage. Nat Immunol. 2012 Jul 15.

Bezman NA, Kim CC, Sun JC, Min-Oo G, Hendricks DW, Kamimura Y, Best JA, Goldrath AW, Lanier LL; The Immunological Genome Project Consortium. Molecular definition of the identity and activation of natural killer cells. Nat Immunol. 2012 Aug 19.

Benoist C, Lanier L, Merad M, Mathis D; The Immunological Genome Project Consortium.Consortium biology in immunology: the perspective from the Immunological Genome Project. Nat Rev Immunol. 2012 Oct;12

Cohen NR, Brennan PJ, Shay T, Watts GF, Brigl M, Kang J, Brenner MB; The Immunological Genome Project Consortium. Shared and distinct transcriptional programs underlie the hybrid nature of iNKT cells. Nat Immunol. 2013 Jan;14.

Best JA, Blair DA, Knell J, Yang E, Mayya V, Doedens A, Dustin ML, Goldrath AW; The Immunological Genome Project Consortium. Transcriptional insights into the CD8(+) T cell response to infection and memory T cell formation. Nat Immunol. 2013 Apr;14

Malhotra N, Narayan K, Cho OH, Sylvia KE, Yin C, Melichar H, Rashighi M, Lefebvre V, Harris JE, Berg LJ, Kang J; The Immunological Genome Project Consortium. A network of high-mobility group box transcription factors programs innate interleukin-17 production. Immunity. 2013 Apr 18

Jojic V, Shay T, Sylvia K, Zuk O, Sun X, Kang J, Regev A, Koller D; The Immunological Genome Project Consortium. Identification of transcriptional regulators in the mouse immune system. Nat Immunol. 2013 Jun;14

Mingueneau M, Kreslavsky T, Gray D, Heng T, Cruse R, Ericson J, Bendall S, Spitzer MH, Nolan GP, Kobayashi K, von Boehmer H, Mathis D, Benoist C; The Immunological Genome Project Consortium. The transcriptional landscape of αβ T cell differentiation. Nat Immunol. 2013 Jun;14

Ergun A, Doran G, Costello JC, Paik HH, Collins JJ, Mathis D, Benoist C; The Immunological Genome Project Consortium. Differential splicing across immune system lineages. PNAS 2013 Aug 27

Mostafavi S, Ortiz-Lopez A, Bogue MA, Hattori K, Pop C, Koller D, Mathis D, Benoist C; The Immunological Genome Project Consortium. Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains. J Immunol. 2014 Nov 1

Ericson JA, Duffau P, Yasuda K, Ortiz-Lopez A, Rothamel K, Rifkin IR, Monach PA; The Immunological Genome Project Consortium. Gene expression during the generation and activation of mouse neutrophils: implication of novel functional and regulatory pathways. PLoS One. 2014 Oct 3

ImmGen at 15. The Immunological Genome Project Consortium. Nat Immunol. 2020