Publications

Complete List of Published Work in My Bibliography

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Recent Peer-reviewed Publications in Print

Human serous cavity macrophages and dendritic cells possess counterparts in the mouse with a distinct distribution between species.
Han J, Gallerand A, Erlich EC, Helmink BA, Mair I, Li X, Eckhouse SR, Dimou FM, Shakhsheer BA, Phelps HM, Chan MM, Mintz RL, Lee DD, Schilling JD, Finlay CM, Allen JE, Jakubzick CV, Else KJ, Onufer EJ, Zhang N, Randolph GJ
Nat Immunol. 2024 Jan;25(1):155-165. doi: 10.1038/s41590-023-01688-7. Epub 2023 Dec 15.
PMID: 38102487

Immunogenicity Threshold in Allogeneic Cells Impacts CTL Response to Nondominant Congenic Antigens.
Rawat K, Mara AB, King WT, Nnam CF, Jakubzick CV
J Immunol. 2023 Dec 1;211(11):1623-1629. doi: 10.4049/jimmunol.2300548.
PMID: 37850969

The role of recruitment versus training in influenza-induced lasting changes to alveolar macrophage function.
Iliakis CS, Kulikauskaite J, Aegerter H, Li F, Piattini F, Jakubzick CV, Guilliams M, Kopf M, Wack A
Nat Immunol. 2023 Oct;24(10):1639-1641. doi: 10.1038/s41590-023-01602-1. Epub 2023 Aug 28.
PMID: 37640788

Channeling antigens to CD8(+) T cells.
Rawat K, Jakubzick CV
Science. 2023 Jun 23;380(6651):1218-1219. doi: 10.1126/science.adi5711. Epub 2023 Jun 22.
PMID: 37347866

Macrophages show up in style when Th2 lymphocytes organize their homecoming.
Li X, Jakubzick CV
Immunity. 2023 May 9;56(5):900-902. doi: 10.1016/j.immuni.2023.04.007.
PMID: 37163989

CCL5-producing migratory dendritic cells guide CCR5+ monocytes into the draining lymph nodes.
Rawat K, Tewari A, Li X, Mara AB, King WT, Gibbings SL, Nnam CF, Kolling FW, Lambrecht BN, Jakubzick CV
J Exp Med. 2023 Jun 5;220(6) doi: 10.1084/jem.20222129. Epub 2023 Mar 22.
PMID: 36946983

Network analysis of large-scale ImmGen and Tabula Muris datasets highlights metabolic diversity of tissue mononuclear phagocytes.
Gainullina A, Mogilenko DA, Huang LH, Todorov H, Narang V, Kim KW, Yng LS, Kent A, Jia B, Seddu K, Krchma K, Wu J, Crozat K, Tomasello E, Dress R, See P, Scott C, Gibbings S, Bajpai G, Desai JV, Maier B, This S, Wang P, Aguilar SV, Poupel L, Dussaud S, Zhou TA, Angeli V, Blander JM, Choi K, Dalod M, Dzhagalov I, Gautier EL, Jakubzick C, Lavine K, Lionakis MS, Paidassi H, Sieweke MH, Ginhoux F, Guilliams M, Benoist C, Merad M, Randolph GJ, Sergushichev A, Artyomov MN, ImmGen Consortium
Cell Rep. 2023 Feb 28;42(2):112046. doi: 10.1016/j.celrep.2023.112046. Epub 2023 Jan 27.
PMID: 36708514

Biology of lung macrophages in health and disease.
Aegerter H, Lambrecht BN, Jakubzick CV
Immunity. 2022 Sep 13;55(9):1564-1580. doi: 10.1016/j.immuni.2022.08.010.
PMID: 36103853

Natural Antibodies Alert the Adaptive Immune System of the Presence of Transformed Cells in Early Tumorigenesis.
Rawat K, Soucy SM, Kolling FW, Diaz KM, King WT, Tewari A, Jakubzick CV
J Immunol. 2022 Oct 1;209(7):1252-1259. doi: 10.4049/jimmunol.2200447. Epub 2022 Aug 26.
PMID: 36028292

ScRNA-seq expression of IFI27 and APOC2 identifies four alveolar macrophage superclusters in healthy BALF.
Li X, Kolling FW, Aridgides D, Mellinger D, Ashare A, Jakubzick CV
Life Sci Alliance. 2022 Nov;5(11) doi: 10.26508/lsa.202201458. Epub 2022 Jul 12.
PMID: 35820705

Book Chapters

Jakubzick C. and Randolph G.J. Methods to study pulmonary dendritic cell migration. Chapter: Dendritic Cell Protocols, Methods Mol Biol. 2010

Redente EF, Jakubzick C, Martin TR, and Riches DW. Innate Immunity. Chapter: Murray and Nadels Textbook of Respiratory Medicine. 2015
Atif SM, Gibbings SL, Jakubzick CV. Isolation and Identification of Interstitial Macrophages from the Lungs Using Different Digestion Enzymes and Staining Strategies. Methods Mol Biol. 2018

Gibbings SL, Jakubzick CV. A consistent method to identify and isolate mononuclear phagocytes from human lung and lymph node, Type 2 Immunity. Methods Mol Biol. 2018

Gibbings SL, Jakubzick CV. A consistent method to identify and isolate mononuclear phagocytes from murine lung and lymph node, Lung Innate Immunity and Inflammation: Methods Mol Biol. Springer. 2018

Jakubzick C, Redente EF, Martin TR, and Riches DW. Innate Immunity. Chapter: Murray and Nadels Textbook of Respiratory Medicine. 2020

Dr. Jakubzick is part of the Immunological Genome Project Consortium

Malhotra D, Fletcher AL, Astarita J, Lukacs-Kornek V, Tayalia P, Gonzalez SF, Elpek KG, Chang SK, Knoblich K, Hemler ME, Brenner MB, Carroll MC, Mooney DJ, Turley SJ; The Immunological Genome Project Consortium. Transcriptional profiling of stroma from inflamed and resting lymph nodes defines immunological hallmarks. Nat Immunol. 2012 Apr 1.

Narayan K, Sylvia KE, Malhotra N, Yin CC, Martens G, Vallerskog T, Kornfeld H, Xiong N, Cohen NR, Brenner MB, Berg LJ, Kang J; The Immunological Genome Project Consortium. Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes. Nat Immunol. 2012 Apr 1.

Miller JC, Brown BD, Shay T, Gautier EL, Jojic V, Cohain A, Pandey G, Leboeuf M, Elpek KG, Helft J, Hashimoto D, Chow A, Price J, Greter M, Bogunovic M, Bellemare-Pelletier A, Frenette PS, Randolph GJ, Turley SJ, Merad M; The The Immunological Genome Project Consortium. Deciphering the transcriptional network of the dendritic cell lineage. Nat Immunol. 2012 Jul 15.

Bezman NA, Kim CC, Sun JC, Min-Oo G, Hendricks DW, Kamimura Y, Best JA, Goldrath AW, Lanier LL; The Immunological Genome Project Consortium. Molecular definition of the identity and activation of natural killer cells. Nat Immunol. 2012 Aug 19.

Benoist C, Lanier L, Merad M, Mathis D; The Immunological Genome Project Consortium.Consortium biology in immunology: the perspective from the Immunological Genome Project. Nat Rev Immunol. 2012 Oct;12

Cohen NR, Brennan PJ, Shay T, Watts GF, Brigl M, Kang J, Brenner MB; The Immunological Genome Project Consortium. Shared and distinct transcriptional programs underlie the hybrid nature of iNKT cells. Nat Immunol. 2013 Jan;14.

Best JA, Blair DA, Knell J, Yang E, Mayya V, Doedens A, Dustin ML, Goldrath AW; The Immunological Genome Project Consortium. Transcriptional insights into the CD8(+) T cell response to infection and memory T cell formation. Nat Immunol. 2013 Apr;14

Malhotra N, Narayan K, Cho OH, Sylvia KE, Yin C, Melichar H, Rashighi M, Lefebvre V, Harris JE, Berg LJ, Kang J; The Immunological Genome Project Consortium. A network of high-mobility group box transcription factors programs innate interleukin-17 production. Immunity. 2013 Apr 18

Jojic V, Shay T, Sylvia K, Zuk O, Sun X, Kang J, Regev A, Koller D; The Immunological Genome Project Consortium. Identification of transcriptional regulators in the mouse immune system. Nat Immunol. 2013 Jun;14

Mingueneau M, Kreslavsky T, Gray D, Heng T, Cruse R, Ericson J, Bendall S, Spitzer MH, Nolan GP, Kobayashi K, von Boehmer H, Mathis D, Benoist C; The Immunological Genome Project Consortium. The transcriptional landscape of αβ T cell differentiation. Nat Immunol. 2013 Jun;14

Ergun A, Doran G, Costello JC, Paik HH, Collins JJ, Mathis D, Benoist C; The Immunological Genome Project Consortium. Differential splicing across immune system lineages. PNAS 2013 Aug 27

Mostafavi S, Ortiz-Lopez A, Bogue MA, Hattori K, Pop C, Koller D, Mathis D, Benoist C; The Immunological Genome Project Consortium. Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains. J Immunol. 2014 Nov 1

Ericson JA, Duffau P, Yasuda K, Ortiz-Lopez A, Rothamel K, Rifkin IR, Monach PA; The Immunological Genome Project Consortium. Gene expression during the generation and activation of mouse neutrophils: implication of novel functional and regulatory pathways. PLoS One. 2014 Oct 3

ImmGen at 15. The Immunological Genome Project Consortium. Nat Immunol. 2020