Complete List of Published Work in My Bibliography
Recent Peer-reviewed Publications in Print
Chemokine-defined macrophage niches establish spatial organization of tumor immunity.
Ghosh S, Li X, Rawat K, Dighal A, Kalinowski S, Hosseini R, Kolling FW, Ringelberg CS, Jakubzick CV
Nat Immunol. 2026 Mar 23; doi: 10.1038/s41590-026-02445-2. Epub 2026 Mar 23.
PMID: 41872505
Vicarious trauma primes innate immunity and reconfigures human brain networks.
Lux BK, Kos MC, Ward D, Kolling FW, Li X, Jakubzick CV, Wager T
bioRxiv. 2026 Jan 6; pii: 2026.01.05.697785. doi: 10.64898/2026.01.05.697785. Epub 2026 Jan 6.
PMID: 41542437
Anti-PD-L2 immunotherapy is efficacious against melanoma in aged hosts through IL-17 and IFNγ signalling.
Ontiveros CO, Garcia MG, Murray CE, Deng Y, Bai H, Tanner C, Leung B, Li X, Padron A, Reyes RM, Kancharla A, Soh KT, Krishnan S, Chand D, Balasubramanian A, Hegner C, Jakubzick CV, Gupta HB, Turk MJ, Sundrud M, Conejo-Garcia JR, Curiel TJ
Nat Commun. 2025 Nov 19;16(1):10176. doi: 10.1038/s41467-025-65025-2. Epub 2025 Nov 19.
PMID: 41261166
Facial Vein Venipuncture for Murine Blood Collection.
Kalinowski S, Jakubzick CV
J Vis Exp. 2025 Sep 26;(223) doi: 10.3791/68776. Epub 2025 Sep 26.
PMID: 41082463
Multi-omic and Single-Cell Approaches for Elucidating Cell Biology and Pathobiology of Lung Disease.
Sarma A, Sun X, Sucre J, Hong J, Medzikovic L, Jakubzick CV, Li X, Zemans RL, Singer BD
Am J Respir Cell Mol Biol. 2025 Jul 23; doi: 10.1165/rcmb.2025-0092PS. Epub 2025 Jul 23.
PMID: 40700713
The Dichotomy of Tumor Control by Recruited and Resident Tumor-Associated Macrophages.
Jakubzick C, Ghosh S, Li X, Rawat K, Dighal A, Kalinowski S, Knolling F 4th, Ringelberg C
Res Sq. 2025 Jul 4; pii: rs.3.rs-6977440. doi: 10.21203/rs.3.rs-6977440/v1. Epub 2025 Jul 4.
PMID: 40630529
The Heterogeneity, Parallels, and Divergence of Alveolar Macrophages in Humans and Mice.
Li X, Jakubzick CV
Am J Respir Cell Mol Biol. 2025 Mar;72(3):335-337. doi: 10.1165/rcmb.2024-0315LE.
PMID: 39535274
Coordinated chemokine expression defines macrophage subsets across tissues.
Li X, Mara AB, Musial SC, Kolling FW, Gibbings SL, Gerebtsov N, Jakubzick CV
Nat Immunol. 2024 Jun;25(6):1110-1122. doi: 10.1038/s41590-024-01826-9. Epub 2024 May 2.
PMID: 38698086
Natural antibodies drive type 2 immunity in response to damage-associated molecular patterns.
Mara AB, Rawat K, King WT, Jakubzick CV
JCI Insight. 2024 Mar 12;9(8) doi: 10.1172/jci.insight.177230. Epub 2024 Mar 12.
PMID: 38470489
Human serous cavity macrophages and dendritic cells possess counterparts in the mouse with a distinct distribution between species.
Han J, Gallerand A, Erlich EC, Helmink BA, Mair I, Li X, Eckhouse SR, Dimou FM, Shakhsheer BA, Phelps HM, Chan MM, Mintz RL, Lee DD, Schilling JD, Finlay CM, Allen JE, Jakubzick CV, Else KJ, Onufer EJ, Zhang N, Randolph GJ
Nat Immunol. 2024 Jan;25(1):155-165. doi: 10.1038/s41590-023-01688-7. Epub 2023 Dec 15.
PMID: 38102487
Book Chapters
Jakubzick C. and Randolph G.J. Methods to study pulmonary dendritic cell migration. Chapter: Dendritic Cell Protocols, Methods Mol Biol. 2010
Redente EF, Jakubzick C, Martin TR, and Riches DW. Innate Immunity. Chapter: Murray and Nadels Textbook of Respiratory Medicine. 2015
Atif SM, Gibbings SL, Jakubzick CV. Isolation and Identification of Interstitial Macrophages from the Lungs Using Different Digestion Enzymes and Staining Strategies. Methods Mol Biol. 2018
Gibbings SL, Jakubzick CV. A consistent method to identify and isolate mononuclear phagocytes from human lung and lymph node, Type 2 Immunity. Methods Mol Biol. 2018
Gibbings SL, Jakubzick CV. A consistent method to identify and isolate mononuclear phagocytes from murine lung and lymph node, Lung Innate Immunity and Inflammation: Methods Mol Biol. Springer. 2018
Jakubzick C, Redente EF, Martin TR, and Riches DW. Innate Immunity. Chapter: Murray and Nadels Textbook of Respiratory Medicine. 2020
Dr. Jakubzick is part of the Immunological Genome Project Consortium
Malhotra D, Fletcher AL, Astarita J, Lukacs-Kornek V, Tayalia P, Gonzalez SF, Elpek KG, Chang SK, Knoblich K, Hemler ME, Brenner MB, Carroll MC, Mooney DJ, Turley SJ; The Immunological Genome Project Consortium. Transcriptional profiling of stroma from inflamed and resting lymph nodes defines immunological hallmarks. Nat Immunol. 2012 Apr 1.
Narayan K, Sylvia KE, Malhotra N, Yin CC, Martens G, Vallerskog T, Kornfeld H, Xiong N, Cohen NR, Brenner MB, Berg LJ, Kang J; The Immunological Genome Project Consortium. Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes. Nat Immunol. 2012 Apr 1.
Miller JC, Brown BD, Shay T, Gautier EL, Jojic V, Cohain A, Pandey G, Leboeuf M, Elpek KG, Helft J, Hashimoto D, Chow A, Price J, Greter M, Bogunovic M, Bellemare-Pelletier A, Frenette PS, Randolph GJ, Turley SJ, Merad M; The The Immunological Genome Project Consortium. Deciphering the transcriptional network of the dendritic cell lineage. Nat Immunol. 2012 Jul 15.
Bezman NA, Kim CC, Sun JC, Min-Oo G, Hendricks DW, Kamimura Y, Best JA, Goldrath AW, Lanier LL; The Immunological Genome Project Consortium. Molecular definition of the identity and activation of natural killer cells. Nat Immunol. 2012 Aug 19.
Benoist C, Lanier L, Merad M, Mathis D; The Immunological Genome Project Consortium.Consortium biology in immunology: the perspective from the Immunological Genome Project. Nat Rev Immunol. 2012 Oct;12
Cohen NR, Brennan PJ, Shay T, Watts GF, Brigl M, Kang J, Brenner MB; The Immunological Genome Project Consortium. Shared and distinct transcriptional programs underlie the hybrid nature of iNKT cells. Nat Immunol. 2013 Jan;14.
Best JA, Blair DA, Knell J, Yang E, Mayya V, Doedens A, Dustin ML, Goldrath AW; The Immunological Genome Project Consortium. Transcriptional insights into the CD8(+) T cell response to infection and memory T cell formation. Nat Immunol. 2013 Apr;14
Malhotra N, Narayan K, Cho OH, Sylvia KE, Yin C, Melichar H, Rashighi M, Lefebvre V, Harris JE, Berg LJ, Kang J; The Immunological Genome Project Consortium. A network of high-mobility group box transcription factors programs innate interleukin-17 production. Immunity. 2013 Apr 18
Jojic V, Shay T, Sylvia K, Zuk O, Sun X, Kang J, Regev A, Koller D; The Immunological Genome Project Consortium. Identification of transcriptional regulators in the mouse immune system. Nat Immunol. 2013 Jun;14
Mingueneau M, Kreslavsky T, Gray D, Heng T, Cruse R, Ericson J, Bendall S, Spitzer MH, Nolan GP, Kobayashi K, von Boehmer H, Mathis D, Benoist C; The Immunological Genome Project Consortium. The transcriptional landscape of αβ T cell differentiation. Nat Immunol. 2013 Jun;14
Ergun A, Doran G, Costello JC, Paik HH, Collins JJ, Mathis D, Benoist C; The Immunological Genome Project Consortium. Differential splicing across immune system lineages. PNAS 2013 Aug 27
Mostafavi S, Ortiz-Lopez A, Bogue MA, Hattori K, Pop C, Koller D, Mathis D, Benoist C; The Immunological Genome Project Consortium. Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains. J Immunol. 2014 Nov 1
Ericson JA, Duffau P, Yasuda K, Ortiz-Lopez A, Rothamel K, Rifkin IR, Monach PA; The Immunological Genome Project Consortium. Gene expression during the generation and activation of mouse neutrophils: implication of novel functional and regulatory pathways. PLoS One. 2014 Oct 3
ImmGen at 15. The Immunological Genome Project Consortium. Nat Immunol. 2020