{"id":183,"date":"2019-03-21T18:49:19","date_gmt":"2019-03-21T18:49:19","guid":{"rendered":"https:\/\/geiselmed.dartmouth.edu\/gsr\/?page_id=183"},"modified":"2026-04-28T22:41:07","modified_gmt":"2026-04-28T22:41:07","slug":"instruments","status":"publish","type":"page","link":"https:\/\/geiselmed.dartmouth.edu\/gsr\/instruments\/","title":{"rendered":"Instruments"},"content":{"rendered":"

Sequencing \/ NGS<\/h2>\n\n\n\n
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Illumina NextSeq 2000<\/h3>\n

High-output benchtop sequencer capable of producing 100M\u20131.2B reads per run. Supports RNA-seq, exome sequencing, single cell, 16S\/ITS, and TCR\/BCR-seq applications.<\/p>\n<\/div>\n<\/td>\n

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<\/div>\n
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Illumina MiniSeq<\/h3>\n

Compact sequencer producing 7M\u201330M reads per run. Ideal for targeted sequencing, miRNA-seq, and small whole genomes.<\/p>\n<\/div>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n\n\n\n
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<\/div>\n
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Eppendorf EpMotion 5075t<\/h3>\n

Automated liquid handling robot for NGS workflows. Accesses tubes and 96\/384 well plate formats with 14 deck positions.<\/p>\n<\/div>\n<\/td>\n

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Single Cell \/ Spatial<\/h2>\n\n\n\n
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10x Genomics Chromium X<\/h3>\n

High-throughput single cell platform supporting 5'\/3' mRNA-seq, TCR\/BCR-seq, ATAC-seq, CITE-seq, Multiome (RNA+ATAC), and scRNA-seq on fixed\/FFPE samples.<\/p>\n<\/div>\n<\/td>\n

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<\/div>\n
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10x Genomics CytAssist<\/h3>\n

Enables spatial transcriptomics on FFPE and fresh frozen tissues using Visium technology. Sections are H&E stained, imaged, and transferred to Visium slides.<\/p>\n<\/div>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n\n\n\n
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10x Genomics Xenium Analyzer<\/h3>\n

In situ spatial analysis platform that characterizes 100s\u20131,000s of genes in cells and tissues with ultra-precise single cell spatial imaging.<\/p>\n<\/div>\n<\/td>\n

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Cytiva VIA Extractor<\/h3>\n

Automated tissue dissociation system for preparing single cell suspensions. Full control over temperature, homogenization intensity, and run time.<\/p>\n<\/div>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n\n\n\n
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Nexcelom Cellometer K2<\/h3>\n

Automated fluorescence-based cell counter using AO\/PI dye. Provides cell size measurements and tunable counting parameters with PDF results reports.<\/p>\n<\/div>\n<\/td>\n

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<\/div>\n
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Curiox Laminar Wash Mini<\/h3>\n

Centrifuge-free, laminar flow-based washing system. Provides gentle cell washes for increased cell retention and better data quality.<\/p>\n<\/div>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

QC<\/h2>\n\n\n\n
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<\/div>\n
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Agilent Fragment Analyzer<\/h3>\n

Capillary electrophoresis system for quality assessment of gDNA, NGS libraries, smRNA, and total RNA. 96 well plate format for high throughput.<\/p>\n<\/div>\n<\/td>\n

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<\/div>\n
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Agilent TapeStation<\/h3>\n

Quick quality assessment of DNA and RNA including gDNA, NGS libraries, smRNA, and total RNA.<\/p>\n<\/div>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n\n\n\n
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Invitrogen Qubit Flex<\/h3>\n

Benchtop fluorometer for highly accurate quantification of DNA and RNA. More sensitive than UV absorbance for low concentration samples. Measures 8 samples at a time.<\/p>\n<\/div>\n<\/td>\n

<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

Sequencing \/ NGS Illumina NextSeq 2000 High-output benchtop sequencer capable of producing 100M\u20131.2B reads per run. Supports RNA-seq, exome sequencing, single cell, 16S\/ITS, and TCR\/BCR-seq applications. Illumina MiniSeq Compact sequencer producing 7M\u201330M reads per run. Ideal for targeted sequencing, miRNA-seq, and small whole genomes. Eppendorf EpMotion 5075t Automated liquid handling [\u2026] <\/p>\n

<\/div>\n

Read More<\/a><\/p>\n","protected":false},"author":77,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"page-templates\/template-full-width.php","meta":{"footnotes":""},"class_list":["post-183","page","type-page","status-publish","hentry","author-77"],"jetpack_shortlink":"https:\/\/wp.me\/PbaUZP-2X","jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/geiselmed.dartmouth.edu\/gsr\/wp-json\/wp\/v2\/pages\/183","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/geiselmed.dartmouth.edu\/gsr\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/geiselmed.dartmouth.edu\/gsr\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/geiselmed.dartmouth.edu\/gsr\/wp-json\/wp\/v2\/users\/77"}],"replies":[{"embeddable":true,"href":"https:\/\/geiselmed.dartmouth.edu\/gsr\/wp-json\/wp\/v2\/comments?post=183"}],"version-history":[{"count":34,"href":"https:\/\/geiselmed.dartmouth.edu\/gsr\/wp-json\/wp\/v2\/pages\/183\/revisions"}],"predecessor-version":[{"id":889,"href":"https:\/\/geiselmed.dartmouth.edu\/gsr\/wp-json\/wp\/v2\/pages\/183\/revisions\/889"}],"wp:attachment":[{"href":"https:\/\/geiselmed.dartmouth.edu\/gsr\/wp-json\/wp\/v2\/media?parent=183"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}