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A guide to the BRAIN Initiative Cell Census Network data ecosystem.
Hawrylycz M, Martone ME, Ascoli GA, Bjaalie JG, Dong HW, Ghosh SS, Gillis J, Hertzano R, Haynor DR, Hof PR, Kim Y, Lein E, Liu Y, Miller JA, Mitra PP, Mukamel E, Ng L, Osumi-Sutherland D, Peng H, Ray PL, Sanchez R, Regev A, Ropelewski A, Scheuermann RH, Tan SZK, Thompson CL, Tickle T, Tilgner H, Varghese M, Wester B, White O, Zeng H, Aevermann B, Allemang D, Ament S, Athey TL, Baker C, Baker KS, Baker PM, Bandrowski A, Banerjee S, Bishwakarma P, Carr A, Chen M, Choudhury R, Cool J, Creasy H, D'Orazi F, Degatano K, Dichter B, Ding SL, Dolbeare T, Ecker JR, Fang R, Fillion-Robin JC, Fliss TP, Gee J, Gillespie T, Gouwens N, Zhang GQ, Halchenko YO, Harris NL, Herb BR, Hintiryan H, Hood G, Horvath S, Huo B, Jarecka D, Jiang S, Khajouei F, Kiernan EA, Kir H, Kruse L, Lee C, Lelieveldt B, Li Y, Liu H, Liu L, Markuhar A, Mathews J, Mathews KL, Mezias C, Miller MI, Mollenkopf T, Mufti S, Mungall CJ, Orvis J, Puchades MA, Qu L, Receveur JP, Ren B, Sjoquist N, Staats B, Tward D, van Velthoven CTJ, Wang Q, Xie F, Xu H, Yao Z, Yun Z, Zhang YR, Zheng WJ, Zingg B
PLoS Biol. 2023 Jun;21(6):e3002133. doi: 10.1371/journal.pbio.3002133. Epub 2023 Jun 30.
PMID: 37390046 Pancreatic acinar metaplasia at the gastroesophageal junction is associated with protective effect against intestinal metaplasia in patients with gastroesophageal reflux disease.
Andersen M Jr, Ren B, Romano ME, Schutz SN, Rothstein RI, Suriawinata AA, Liu X, Lisovsky M
Hum Pathol. 2023 Sep;139:1-8. doi: 10.1016/j.humpath.2023.06.009. Epub 2023 Jun 24.
PMID: 37364824 Identification of Spatial Proteomic Signatures of Colon Tumor Metastasis: A Digital Spatial Profiling Approach.
Levy JJ, Zavras JP, Veziroglu EM, Nasir-Moin M, Kolling FW, Christensen BC, Salas LA, Barney RE, Palisoul SM, Ren B, Liu X, Kerr DA, Pointer KB, Tsongalis GJ, Vaickus LJ
Am J Pathol. 2023 Jun;193(6):778-795. doi: 10.1016/j.ajpath.2023.02.020. Epub 2023 Apr 8.
PMID: 37037284 Bladder cancer prognosis using deep neural networks and histopathology images.
Barrios W, Abdollahi B, Goyal M, Song Q, Suriawinata M, Richards R, Ren B, Schned A, Seigne J, Karagas M, Hassanpour S
J Pathol Inform. 2022;13:100135. doi: 10.1016/j.jpi.2022.100135. Epub 2022 Aug 28.
PMID: 36268091 An unusual location for metastasis - Breast cancer in the bladder.
Hanley M, Rezaee M, Ren B, Sverrisson E
Urol Case Rep. 2022 Nov;45:102215. doi: 10.1016/j.eucr.2022.102215. Epub 2022 Sep 7.
PMID: 36147192 Extrarenal renal cell carcinoma arising in the kidney proximity but without an identifiable renal primary - an intriguing dilemma: report of three cases and review of the literature.
Mansoor M, Young-Speirs M, Ren B, Gotto G, Merten L, Sawhney S, Siadat F, Acosta AM, Agaimy A, Trpkov K
Histopathology. 2022 Nov;81(5):635-643. doi: 10.1111/his.14736. Epub 2022 Aug 23.
PMID: 35941718 Evaluation of an Artificial Intelligence-Augmented Digital System for Histologic Classification of Colorectal Polyps.
Nasir-Moin M, Suriawinata AA, Ren B, Liu X, Robertson DJ, Bagchi S, Tomita N, Wei JW, MacKenzie TA, Rees JR, Hassanpour S
JAMA Netw Open. 2021 Nov 1;4(11):e2135271. doi: 10.1001/jamanetworkopen.2021.35271. Epub 2021 Nov 1.
PMID: 34792588 Splenic-vasculature involvement is associated with poor prognosis in resected distal pancreatic cancer.
Yin F, Saad M, Lin J, Jackson CR, Ren B, Lawson C, Karamchandani DM, Bernabeu BQ, Jiang W, Dhir T, Zheng R, Schultz CW, Zhang D, Thomas CL, Zhang X, Lai J, Schild M, Zhang X, Xie H, Liu X
Gastroenterol Rep (Oxf). 2021 Apr;9(2):139-145. doi: 10.1093/gastro/goaa084. Epub 2020 Nov 24.
PMID: 34026221 Complaint of Testicular Discomfort in Patient with Esophageal Adenocarcinoma.
Krughoff K, Schned A, Ren B, Pais VM Jr
Case Rep Urol. 2021;2021:6692578. doi: 10.1155/2021/6692578. Epub 2021 Apr 19.
PMID: 33986968 Development and evaluation of a deep neural network for histologic classification of renal cell carcinoma on biopsy and surgical resection slides.
Zhu M, Ren B, Richards R, Suriawinata M, Tomita N, Hassanpour S
Sci Rep. 2021 Mar 29;11(1):7080. doi: 10.1038/s41598-021-86540-4. Epub 2021 Mar 29.
PMID: 33782535 View more publications on PubMed |