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Casey S Greene, PhD

Title(s):
Adjunct Assistant Professor of Genetics

Department(s):
Genetics

Programs:
Molecular and Cellular Biology Graduate Programs
Norris Cotton Cancer Center
Quantitative Biomedical Sciences

Websites:
http://www.greenelab.com

Contact Information:


Selected Publications:

 

Machine Learning Analysis Identifies <i>Drosophila</i><i>Grunge/Atrophin</i> as an Important Learning and Memory Gene Required for Memory Retention and Social Learning.
Kacsoh BZ, Greene CS, Bosco G
G3 (Bethesda). 2017 Sep 9; pii: g3.300172.2017. doi: 10.1534/g3.117.300172. Epub 2017 Sep 9.
PMID: 28889104

Implicating candidate genes at GWAS signals by leveraging topologically associating domains.
Way GP, Youngstrom DW, Hankenson KD, Greene CS, Grant SF
Eur J Hum Genet. 2017 Aug 9; doi: 10.1038/ejhg.2017.108. Epub 2017 Aug 9.
PMID: 28792001

Unsupervised Extraction of Stable Expression Signatures from Public Compendia with an Ensemble of Neural Networks.
Tan J, Doing G, Lewis KA, Price CE, Chen KM, Cady KC, Perchuk B, Laub MT, Hogan DA, Greene CS
Cell Syst. 2017 Jul 26;5(1):63-71.e6. doi: 10.1016/j.cels.2017.06.003. Epub 2017 Jul 12.
PMID: 28711280

Data-Sharing Models
Byrd JB, Greene CS
N Engl J Med. 2017 Jun 8;376(23):2305. doi: 10.1056/NEJMc1705477.
PMID: 28594152

Tissue-specific network-based genome wide study of amygdala imaging phenotypes to identify functional interaction modules.
Yao X, Yan J, Liu K, Kim S, Nho K, Risacher SL, Greene CS, Moore JH, Saykin AJ, Shen L, Alzheimer’s Disease Neuroimaging Initiative.
Bioinformatics. 2017 May 29; doi: 10.1093/bioinformatics/btx344. Epub 2017 May 29.
PMID: 28575147

Celebrating parasites.
Greene CS, Garmire LX, Gilbert JA, Ritchie MD, Hunter LE
Nat Genet. 2017 Mar 30;49(4):483-484. doi: 10.1038/ng.3830.
PMID: 28358134

A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis.
Taroni JN, Greene CS, Martyanov V, Wood TA, Christmann RB, Farber HW, Lafyatis RA, Denton CP, Hinchcliff ME, Pioli PA, Mahoney JM, Whitfield ML
Genome Med. 2017 Mar 23;9(1):27. doi: 10.1186/s13073-017-0417-1. Epub 2017 Mar 23.
PMID: 28330499

Reproducibility of computational workflows is automated using continuous analysis.
Beaulieu-Jones BK, Greene CS
Nat Biotechnol. 2017 Apr;35(4):342-346. doi: 10.1038/nbt.3780. Epub 2017 Mar 13.
PMID: 28288103

Tell me your neighbors, and I will tell you what you are.
Greene CS
Sci Transl Med. 2017 Feb 8;9(376) pii: eaam6058. doi: 10.1126/scitranslmed.aam6058.
PMID: 28179503

A machine learning classifier trained on cancer transcriptomes detects NF1 inactivation signal in glioblastoma.
Way GP, Allaway RJ, Bouley SJ, Fadul CE, Sanchez Y, Greene CS
BMC Genomics. 2017 Feb 6;18(1):127. doi: 10.1186/s12864-017-3519-7. Epub 2017 Feb 6.
PMID: 28166733