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Casey S Greene, Ph.D.

Title(s):
Assistant Professor of Genetics

Department(s):
Genetics

Programs:
Molecular and Cellular Biology Graduate Programs
Norris Cotton Cancer Center
Quantitative Biomedical Sciences

Websites:
http://www.greenelab.com

Contact Information:

Email: Casey.S.Greene@Dartmouth.edu


Selected Publications:

 

Tan J, Ung M, Cheng C, Greene CS
Unsupervised feature construction and knowledge extraction from genome-wide assays of breast cancer with denoising autoencoders.
Pac Symp Biocomput 2015; 20:132-43
PMID: 25592575

Zhu Q, Wong AK, Krishnan A, Aure MR, Tadych A, Zhang R, Corney DC, Greene CS, Bongo LA, Kristensen VN, Charikar M, Li K, Troyanskaya OG
Targeted exploration and analysis of large cross-platform human transcriptomic compendia.
Nat Methods 2015 Jan 12;
PMID: 25581801

Mahoney JM, Taroni J, Martyanov V, Wood TA, Greene CS, Pioli PA, Hinchcliff ME, Whitfield ML
Systems level analysis of systemic sclerosis shows a network of immune and profibrotic pathways connected with genetic polymorphisms.
PLoS Comput Biol 2015 Jan; 11(1):e1004005
PMID: 25569146

Zieselman AL, Fisher JM, Hu T, Andrews PC, Greene CS, Shen L, Saykin AJ, Moore JH
Computational genetics analysis of grey matter density in Alzheimer's disease.
BioData Min 2014; 7:17
PMID: 25165488

Penrod NM, Greene CS, Moore JH
Predicting targeted drug combinations based on Pareto optimal patterns of coexpression network connectivity.
Genome Med 2014; 6(4):33
PMID: 24944582

Greene CS, Tan J, Ung M, Moore JH, Cheng C
Big data bioinformatics.
J Cell Physiol 2014 Dec; 229(12):1896-900
PMID: 24799088

Ju W, Greene CS, Eichinger F, Nair V, Hodgin JB, Bitzer M, Lee YS, Zhu Q, Kehata M, Li M, Jiang S, Rastaldi MP, Cohen CD, Troyanskaya OG, Kretzler M
Defining cell-type specificity at the transcriptional level in human disease.
Genome Res 2013 Nov; 23(11):1862-73
PMID: 23950145

Park CY, Wong AK, Greene CS, Rowland J, Guan Y, Bongo LA, Burdine RD, Troyanskaya OG
Functional knowledge transfer for high-accuracy prediction of under-studied biological processes.
PLoS Comput Biol 2013; 9(3):e1002957
PMID: 23516347

Greene CS, Troyanskaya OG
Chapter 2: Data-driven view of disease biology.
PLoS Comput Biol 2012; 8(12):e1002816
PMID: 23300408

Wong AK, Park CY, Greene CS, Bongo LA, Guan Y, Troyanskaya OG
IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.
Nucleic Acids Res 2012 Jul; 40(Web Server issue):W484-90
PMID: 22684505