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Casey S Greene, PhD

Title(s):
Adjunct Assistant Professor of Genetics

Department(s):
Genetics

Programs:
Molecular and Cellular Biology Graduate Programs
Norris Cotton Cancer Center
Quantitative Biomedical Sciences

Websites:
http://www.greenelab.com

Contact Information:


Selected Publications:

 

Data-Sharing Models
Byrd BJ, Greene CS
N Engl J Med. 2017 Jun 8;376(23):2305. doi: 10.1056/NEJMc1705477.
PMID: 28594152

Tissue-specific network-based genome wide study of amygdala imaging phenotypes to identify functional interaction modules.
Yao X, Yan J, Liu K, Kim S, Nho K, Risacher SL, Greene CS, Moore JH, Saykin AJ, Shen L, Alzheimer’s Disease Neuroimaging Initiative.
Bioinformatics. 2017 May 29; doi: 10.1093/bioinformatics/btx344. Epub 2017 May 29.
PMID: 28575147

Celebrating parasites.
Greene CS, Garmire LX, Gilbert JA, Ritchie MD, Hunter LE
Nat Genet. 2017 Mar 30;49(4):483-484. doi: 10.1038/ng.3830.
PMID: 28358134

A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis.
Taroni JN, Greene CS, Martyanov V, Wood TA, Christmann RB, Farber HW, Lafyatis RA, Denton CP, Hinchcliff ME, Pioli PA, Mahoney JM, Whitfield ML
Genome Med. 2017 Mar 23;9(1):27. doi: 10.1186/s13073-017-0417-1. Epub 2017 Mar 23.
PMID: 28330499

Reproducibility of computational workflows is automated using continuous analysis.
Beaulieu-Jones BK, Greene CS
Nat Biotechnol. 2017 Apr;35(4):342-346. doi: 10.1038/nbt.3780. Epub 2017 Mar 13.
PMID: 28288103

Tell me your neighbors, and I will tell you what you are.
Greene CS
Sci Transl Med. 2017 Feb 8;9(376) pii: eaam6058. doi: 10.1126/scitranslmed.aam6058.
PMID: 28179503

A machine learning classifier trained on cancer transcriptomes detects NF1 inactivation signal in glioblastoma.
Way GP, Allaway RJ, Bouley SJ, Fadul CE, Sanchez Y, Greene CS
BMC Genomics. 2017 Feb 6;18(1):127. doi: 10.1186/s12864-017-3519-7. Epub 2017 Feb 6.
PMID: 28166733

Cheap-seq.
Greene CS
Sci Transl Med. 2016 Dec 21;8(370):370ec203. doi: 10.1126/scitranslmed.aal3701.
PMID: 28003542

NO-BOUNDARY THINKING IN BIOINFORMATICS.
Moore JH, Jennings SF, Greene CS, Hunter LE, Perkins AD, Williams-Devane C, Wunsch DC, Zhao Z, Huang X
Pac Symp Biocomput. 2016;22:646-648.
PMID: 27897015

ADAGE-Based Integration of Publicly Available <i>Pseudomonas aeruginosa</i> Gene Expression Data with Denoising Autoencoders Illuminates Microbe-Host Interactions.
Tan J, Hammond JH, Hogan DA, Greene CS
mSystems. 2016 Jan-Feb;1(1) pii: e00025-15. Epub 2016 Jan 19.
PMID: 27822512