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Casey S Greene, PhD

Title(s):
Adjunct Assistant Professor of Genetics

Department(s):
Genetics

Programs:
Molecular and Cellular Biology Graduate Programs
Norris Cotton Cancer Center
Quantitative Biomedical Sciences

Websites:
http://www.greenelab.com

Contact Information:

Email: Casey.S.Greene@Dartmouth.edu


Selected Publications:

 

Tell me your neighbors, and I will tell you what you are.
Greene CS
Sci Transl Med. 2017 Feb 8;9(376) pii: eaam6058. doi: 10.1126/scitranslmed.aam6058.
PMID: 28179503

A machine learning classifier trained on cancer transcriptomes detects NF1 inactivation signal in glioblastoma.
Way GP, Allaway RJ, Bouley SJ, Fadul CE, Sanchez Y, Greene CS
BMC Genomics. 2017 Feb 6;18(1):127. doi: 10.1186/s12864-017-3519-7. Epub 2017 Feb 6.
PMID: 28166733

Cheap-seq.
Greene CS
Sci Transl Med. 2016 Dec 21;8(370):370ec203. doi: 10.1126/scitranslmed.aal3701.
PMID: 28003542

NO-BOUNDARY THINKING IN BIOINFORMATICS.
Moore JH, Jennings SF, Greene CS, Hunter LE, Perkins AD, Williams-Devane C, Wunsch DC, Zhao Z, Huang X
Pac Symp Biocomput. 2016;22:646-648.
PMID: 27897015

ADAGE-Based Integration of Publicly Available <i>Pseudomonas aeruginosa</i> Gene Expression Data with Denoising Autoencoders Illuminates Microbe-Host Interactions.
Tan J, Hammond JH, Hogan DA, Greene CS
mSystems. 2016 Jan 19;1(1) pii: e00025-15. Epub 2016 Jan 19.
PMID: 27822512

Semi-supervised learning of the electronic health record for phenotype stratification.
Beaulieu-Jones BK, Greene CS, Pooled Resource Open-Access ALS Clinical Trials Consortium.
J Biomed Inform. 2016 Dec;64:168-178. doi: 10.1016/j.jbi.2016.10.007. Epub 2016 Oct 12.
PMID: 27744022

Comprehensive Cross-Population Analysis of High-Grade Serous Ovarian Cancer Supports No More Than Three Subtypes.
Way GP, Rudd J, Wang C, Hamidi H, Fridley BL, Konecny GE, Goode EL, Greene CS, Doherty JA
G3 (Bethesda). 2016 Dec 7;6(12):4097-4103. doi: 10.1534/g3.116.033514. Epub 2016 Dec 7.
PMID: 27729437

An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Toronen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, SedeƱo-Cortes AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernandez JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P
Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6. Epub 2016 Sep 7.
PMID: 27604469

Pathway and network-based strategies to translate genetic discoveries into effective therapies.
Greene CS, Voight BF
Hum Mol Genet. 2016 Oct 1;25(R2):R94-R98. Epub 2016 Jun 23.
PMID: 27340225

Genetic Association-Guided Analysis of Gene Networks for the Study of Complex Traits.
Greene CS, Himmelstein DS
Circ Cardiovasc Genet. 2016 Apr;9(2):179-84. doi: 10.1161/CIRCGENETICS.115.001181.
PMID: 27094199