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Casey S Greene, PhD

Title(s):
Adjunct Assistant Professor of Genetics

Department(s):
Genetics

Programs:
Molecular and Cellular Biology Graduate Programs
Norris Cotton Cancer Center
Quantitative Biomedical Sciences

Websites:
http://www.greenelab.com

Contact Information:

Email: Casey.S.Greene@Dartmouth.edu


Selected Publications:

 

An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Toronen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortes AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernandez JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P
Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6. Epub 2016 Sep 7.
PMID: 27604469

Pathway and network-based strategies to translate genetic discoveries into effective therapies.
Greene CS, Voight BF
Hum Mol Genet. 2016 Oct 1;25(R2):R94-R98. Epub 2016 Jun 23.
PMID: 27340225

Genetic Association-Guided Analysis of Gene Networks for the Study of Complex Traits.
Greene CS, Himmelstein DS
Circ Cardiovasc Genet. 2016 Apr;9(2):179-84. doi: 10.1161/CIRCGENETICS.115.001181.
PMID: 27094199

Genomic characterization of patient-derived xenograft models established from fine needle aspirate biopsies of a primary pancreatic ductal adenocarcinoma and from patient-matched metastatic sites.
Allaway RJ, Fischer DA, de Abreu FB, Gardner TB, Gordon SR, Barth RJ, Colacchio TA, Wood M, Kacsoh BZ, Bouley SJ, Cui J, Hamilton J, Choi JA, Lange JT, Peterson JD, Padmanabhan V, Tomlinson CR, Tsongalis GJ, Suriawinata AA, Greene CS, Sanchez Y, Smith KD
Oncotarget. 2016 Mar 29;7(13):17087-102. doi: 10.18632/oncotarget.7718.
PMID: 26934555

Erratum to: Evolving hard problems: generating human genetics datasets with a complex etiology.
Himmelstein DS, Greene CS, Moore JH
BioData Min. 2016;9:9. doi: 10.1186/s13040-016-0085-5. Epub 2016 Feb 3.
PMID: 26848312

Cross-platform normalization of microarray and RNA-seq data for machine learning applications.
Thompson JA, Tan J, Greene CS
PeerJ. 2016;4:e1621. doi: 10.7717/peerj.1621. Epub 2016 Jan 21.
PMID: 26844019

Network-based analysis of genetic variants associated with hippocampal volume in Alzheimer's disease: a study of ADNI cohorts.
Song A, Yan J, Kim S, Risacher SL, Wong AK, Saykin AJ, Shen L, Greene CS, Alzheimer’s Disease Neuroimaging Initiative
BioData Min. 2016;9:3. doi: 10.1186/s13040-016-0082-8. Epub 2016 Jan 19.
PMID: 26788126

COMPUTATIONAL APPROACHES TO STUDY MICROBES AND MICROBIOMES.
Greene CS, Foster JA, Stanton BA, Hogan DA, Bromberg Y
Pac Symp Biocomput. 2016;21:557-67.
PMID: 26776218

Leveraging global gene expression patterns to predict expression of unmeasured genes.
Rudd J, Zelaya RA, Demidenko E, Goode EL, Greene CS, Doherty JA
BMC Genomics. 2015 Dec 15;16:1065. doi: 10.1186/s12864-015-2250-5. Epub 2015 Dec 15.
PMID: 26666289

Identification of shared and unique susceptibility pathways among cancers of the lung, breast, and prostate from genome-wide association studies and tissue-specific protein interactions.
Qian DC, Byun J, Han Y, Greene CS, Field JK, Hung RJ, Brhane Y, Mclaughlin JR, Fehringer G, Landi MT, Rosenberger A, Bickeboller H, Malhotra J, Risch A, Heinrich J, Hunter DJ, Henderson BE, Haiman CA, Schumacher FR, Eeles RA, Easton DF, Seminara D, Amos CI
Hum Mol Genet. 2015 Dec 20;24(25):7406-20. doi: 10.1093/hmg/ddv440. Epub 2015 Oct 19.
PMID: 26483192