Translation Initiation from Conserved Non-AUG Codons Provides Additional Layers of Regulation and Coding Capacity.
Ivanov IP, Wei J, Caster SZ, Smith KM, Michel AM, Zhang Y, Firth AE, Freitag M, Dunlap JC, Bell-Pedersen D, Atkins JF, Sachs MS
MBio. 2017 Jun 27;8(3) pii: e00844-17. doi: 10.1128/mBio.00844-17. Epub 2017 Jun 27.
PMID: 28655822

Making Time: Conservation of Biological Clocks from Fungi to Animals.
Dunlap JC, Loros JJ
Microbiol Spectr. 2017 May;5(3) doi: 10.1128/microbiolspec.FUNK-0039-2016.
PMID: 28527179

The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion.
Dekhang R, Wu C, Smith KM, Lamb TM, Peterson M, Bredeweg EL, Ibarra O, Emerson JM, Karunarathna N, Lyubetskaya A, Azizi E, Hurley JM, Dunlap JC, Galagan JE, Freitag M, Sachs MS, Bell-Pedersen D
G3 (Bethesda). 2017 Jan 5;7(1):129-142. doi: 10.1534/g3.116.034298. Epub 2017 Jan 5.
PMID: 27856696

Aspergillus fumigatus Photobiology Illuminates the Marked Heterogeneity between Isolates.
Fuller KK, Cramer RA, Zegans ME, Dunlap JC, Loros JJ
MBio. 2016 Sep 20;7(5) pii: e01517-16. doi: 10.1128/mBio.01517-16. Epub 2016 Sep 20.
PMID: 27651362

Circadian Oscillators: Around the Transcription-Translation Feedback Loop and on to Output.
Hurley JM, Loros JJ, Dunlap JC
Trends Biochem Sci. 2016 Oct;41(10):834-46. doi: 10.1016/j.tibs.2016.07.009. Epub 2016 Aug 3.
PMID: 27498225

Modulation of Circadian Gene Expression and Metabolic Compensation by the RCO-1 Corepressor of Neurospora crassa.
Olivares-Yañez C, Emerson J, Kettenbach A, Loros JJ, Dunlap JC, Larrondo LF
Genetics. 2016 Sep;204(1):163-76. doi: 10.1534/genetics.116.191064. Epub 2016 Jul 22.
PMID: 27449058

Structure of the frequency-interacting RNA helicase: a protein interaction hub for the circadian clock.
Conrad KS, Hurley JM, Widom J, Ringelberg CS, Loros JJ, Dunlap JC, Crane BR
EMBO J. 2016 Aug 1;35(15):1707-19. doi: 10.15252/embj.201694327. Epub 2016 Jun 23.
PMID: 27340124

Yes, circadian rhythms actually do affect almost everything.
Dunlap JC, Loros JJ
Cell Res. 2016 Jul;26(7):759-60. doi: 10.1038/cr.2016.65. Epub 2016 May 31.
PMID: 27241553

The Fast-Evolving phy-2 Gene Modulates Sexual Development in Response to Light in the Model Fungus Neurospora crassa.
Wang Z, Li N, Li J, Dunlap JC, Trail F, Townsend JP
MBio. 2016 Mar 8;7(2):e02148. doi: 10.1128/mBio.02148-15. Epub 2016 Mar 8.
PMID: 26956589

Alternative Use of DNA Binding Domains by the Neurospora White Collar Complex Dictates Circadian Regulation and Light Responses.
Wang B, Zhou X, Loros JJ, Dunlap JC
Mol Cell Biol. 2015 Dec 28;36(5):781-93. doi: 10.1128/MCB.00841-15. Epub 2015 Dec 28.
PMID: 26711258

period-1 encodes an ATP-dependent RNA helicase that influences nutritional compensation of the Neurospora circadian clock.
Emerson JM, Bartholomai BM, Ringelberg CS, Baker SE, Loros JJ, Dunlap JC
Proc Natl Acad Sci U S A. 2015 Dec 22;112(51):15707-12. doi: 10.1073/pnas.1521918112. Epub 2015 Dec 8.
PMID: 26647184

The circadian system as an organizer of metabolism.
Hurley JM, Loros JJ, Dunlap JC
Fungal Genet Biol. 2016 May;90:39-43. doi: 10.1016/j.fgb.2015.10.002. Epub 2015 Oct 20.
PMID: 26498192

Seeing the world differently: variability in the photosensory mechanisms of two model fungi.
Dasgupta A, Fuller KK, Dunlap JC, Loros JJ
Environ Microbiol. 2016 Jan;18(1):5-20. doi: 10.1111/1462-2920.13055. Epub 2015 Oct 26.
PMID: 26373782

Development of the CRISPR/Cas9 System for Targeted Gene Disruption in Aspergillus fumigatus.
Fuller KK, Chen S, Loros JJ, Dunlap JC
Eukaryot Cell. 2015 Nov;14(11):1073-80. doi: 10.1128/EC.00107-15. Epub 2015 Aug 28.
PMID: 26318395

A Tool Set for the Genome-Wide Analysis of Neurospora crassa by RT-PCR.
Hurley JH, Dasgupta A, Andrews P, Crowell AM, Ringelberg C, Loros JJ, Dunlap JC
G3 (Bethesda). 2015 Aug 6;5(10):2043-9. doi: 10.1534/g3.115.019141. Epub 2015 Aug 6.
PMID: 26248984

Biological Significance of Photoreceptor Photocycle Length: VIVID Photocycle Governs the Dynamic VIVID-White Collar Complex Pool Mediating Photo-adaptation and Response to Changes in Light Intensity.
Dasgupta A, Chen CH, Lee C, Gladfelter AS, Dunlap JC, Loros JJ
PLoS Genet. 2015 May;11(5):e1005215. doi: 10.1371/journal.pgen.1005215. Epub 2015 May 15.
PMID: 25978382

Circadian control sheds light on fungal bioluminescence.
Oliveira AG, Stevani CV, Waldenmaier HE, Viviani V, Emerson JM, Loros JJ, Dunlap JC
Curr Biol. 2015 Mar 30;25(7):964-8. doi: 10.1016/j.cub.2015.02.021. Epub 2015 Mar 19.
PMID: 25802150

Dissecting the mechanisms of the clock in Neurospora.
Hurley J, Loros JJ, Dunlap JC
Methods Enzymol. 2015;551:29-52. doi: 10.1016/bs.mie.2014.10.009. Epub 2014 Dec 26.
PMID: 25662450

Circadian rhythms. Decoupling circadian clock protein turnover from circadian period determination.
Larrondo LF, Olivares-Yañez C, Baker CL, Loros JJ, Dunlap JC
Science. 2015 Jan 30;347(6221):1257277. doi: 10.1126/science.1257277.
AbstractReprintFull Text
PMID: 25635104

Neurospora crassa: looking back and looking forward at a model microbe.
Roche CM, Loros JJ, McCluskey K, Glass NL
Am J Bot. 2014 Dec;101(12):2022-35. doi: 10.3732/ajb.1400377. Epub 2014 Nov 16.
PMID: 25480699

Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential.
Hurley JM, Dasgupta A, Emerson JM, Zhou X, Ringelberg CS, Knabe N, Lipzen AM, Lindquist EA, Daum CG, Barry KW, Grigoriev IV, Smith KM, Galagan JE, Bell-Pedersen D, Freitag M, Cheng C, Loros JJ, Dunlap JC
Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):16995-7002. doi: 10.1073/pnas.1418963111. Epub 2014 Oct 31.
PMID: 25362047

Fungal photobiology: visible light as a signal for stress, space and time.
Fuller KK, Loros JJ, Dunlap JC
Curr Genet. 2015 Aug;61(3):275-88. doi: 10.1007/s00294-014-0451-0. Epub 2014 Oct 17.
PMID: 25323429

Neurospora WC-1 recruits SWI/SNF to remodel frequency and initiate a circadian cycle.
Wang B, Kettenbach AN, Gerber SA, Loros JJ, Dunlap JC
PLoS Genet. 2014 Sep;10(9):e1004599. doi: 10.1371/journal.pgen.1004599. Epub 2014 Sep 25.
PMID: 25254987

Editorial overview: Host-microbe interactions: fungi.
Dunlap JC, Latge JP
Curr Opin Microbiol. 2014 Aug;20:v-vi. doi: 10.1016/j.mib.2014.07.004. Epub 2014 Jul 25.
PMID: 25066798

Genome-wide characterization of light-regulated genes in Neurospora crassa.
Wu C, Yang F, Smith KM, Peterson M, Dekhang R, Zhang Y, Zucker J, Bredeweg EL, Mallappa C, Zhou X, Lyubetskaya A, Townsend JP, Galagan JE, Freitag M, Dunlap JC, Bell-Pedersen D, Sachs MS
G3 (Bethesda). 2014 Jul 21;4(9):1731-45. doi: 10.1534/g3.114.012617. Epub 2014 Jul 21.
PMID: 25053707

Bright to dim oscillatory response of the Neurospora circadian oscillator.
Gooch VD, Johnson AE, Larrondo LF, Loros JJ, Dunlap JC
J Biol Rhythms. 2014 Feb;29(1):49-59. doi: 10.1177/0748730413517983.
PMID: 24492882

A kinetic study of the effects of light on circadian rhythmicity of the frq promoter of Neurospora crassa.
Gooch VD, Johnson AE, Bourne BJ, Nix BT, Maas JA, Fox JA, Loros JJ, Larrondo LF, Dunlap JC
J Biol Rhythms. 2014 Feb;29(1):38-48. doi: 10.1177/0748730413517981.
PMID: 24492881

Conserved RNA helicase FRH acts nonenzymatically to support the intrinsically disordered neurospora clock protein FRQ.
Hurley JM, Larrondo LF, Loros JJ, Dunlap JC
Mol Cell. 2013 Dec 26;52(6):832-43. doi: 10.1016/j.molcel.2013.11.005. Epub 2013 Dec 5.
PMID: 24316221

Aging well with a little wine and a good clock.
Belden WJ, Dunlap JC
Cell. 2013 Jun 20;153(7):1421-2. doi: 10.1016/j.cell.2013.05.055.
PMID: 23791169

The fungal pathogen Aspergillus fumigatus regulates growth, metabolism, and stress resistance in response to light.
Fuller KK, Ringelberg CS, Loros JJ, Dunlap JC
MBio. 2013 Mar 26;4(2) pii: e00142-13. doi: 10.1128/mBio.00142-13. Epub 2013 Mar 26.
PMID: 23532976

Functional analysis of the Aspergillus nidulans kinome.
De Souza CP, Hashmi SB, Osmani AH, Andrews P, Ringelberg CS, Dunlap JC, Osmani SA
PLoS One. 2013;8(3):e58008. doi: 10.1371/journal.pone.0058008. Epub 2013 Mar 7.
PMID: 23505451

Cell biology: A fable of too much too fast.
Hurley JM, Dunlap JC
Nature. 2013 Mar 7;495(7439):57-8. doi: 10.1038/nature11952. Epub 2013 Feb 17.
PMID: 23417066

Light-inducible system for tunable protein expression in Neurospora crassa.
Hurley JM, Chen CH, Loros JJ, Dunlap JC
G3 (Bethesda). 2012 Oct;2(10):1207-12. doi: 10.1534/g3.112.003939. Epub 2012 Oct 1.
PMID: 23050231

Live-cell monitoring of periodic gene expression in synchronous human cells identifies Forkhead genes involved in cell cycle control.
Grant GD, Gamsby J, Martyanov V, Brooks L 3rd, George LK, Mahoney JM, Loros JJ, Dunlap JC, Whitfield ML
Mol Biol Cell. 2012 Aug;23(16):3079-93. doi: 10.1091/mbc.E11-02-0170. Epub 2012 Jun 27.
PMID: 22740631

High-resolution spatiotemporal analysis of gene expression in real time: in vivo analysis of circadian rhythms in Neurospora crassa using a FREQUENCY-luciferase translational reporter.
Larrondo LF, Loros JJ, Dunlap JC
Fungal Genet Biol. 2012 Sep;49(9):681-3. doi: 10.1016/j.fgb.2012.06.001. Epub 2012 Jun 10.
PMID: 22695169

Global analysis of serine-threonine protein kinase genes in Neurospora crassa.
Park G, Servin JA, Turner GE, Altamirano L, Colot HV, Collopy P, Litvinkova L, Li L, Jones CA, Diala FG, Dunlap JC, Borkovich KA
Eukaryot Cell. 2011 Nov;10(11):1553-64. doi: 10.1128/EC.05140-11. Epub 2011 Sep 30.
PMID: 21965514

Structure of a light-activated LOV protein dimer that regulates transcription.
Vaidya AT, Chen CH, Dunlap JC, Loros JJ, Crane BR
Sci Signal. 2011 Aug 2;4(184):ra50. doi: 10.1126/scisignal.2001945.
PMID: 21868352

CHD1 remodels chromatin and influences transient DNA methylation at the clock gene frequency.
Belden WJ, Lewis ZA, Selker EU, Loros JJ, Dunlap JC
PLoS Genet. 2011 Jul;7(7):e1002166. doi: 10.1371/journal.pgen.1002166. Epub 2011 Jul 21.
PMID: 21811413

The circadian clock of Neurospora crassa.
Baker CL, Loros JJ, Dunlap JC
FEMS Microbiol Rev. 2012 Jan;36(1):95-110. doi: 10.1111/j.1574-6976.2011.00288.x. Epub 2011 Aug 1.
PMID: 21707668

Modulation of clock gene expression by the transcriptional coregulator receptor interacting protein 140 (RIP140).
Poliandri AH, Gamsby JJ, Christian M, Spinella MJ, Loros JJ, Dunlap JC, Parker MG
J Biol Rhythms. 2011 Jun;26(3):187-99. doi: 10.1177/0748730411401579.
PMID: 21628546

High-throughput production of gene replacement mutants in Neurospora crassa.
Park G, Colot HV, Collopy PD, Krystofova S, Crew C, Ringelberg C, Litvinkova L, Altamirano L, Li L, Curilla S, Wang W, Gorrochotegui-Escalante N, Dunlap JC, Borkovich KA
Methods Mol Biol. 2011;722:179-89. doi: 10.1007/978-1-61779-040-9_13.
PMID: 21590421

Physical interaction between VIVID and white collar complex regulates photoadaptation in Neurospora.
Chen CH, DeMay BS, Gladfelter AS, Dunlap JC, Loros JJ
Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16715-20. doi: 10.1073/pnas.1011190107. Epub 2010 Aug 23.
PMID: 20733070

Neurospora illuminates fungal photoreception.
Chen CH, Dunlap JC, Loros JJ
Fungal Genet Biol. 2010 Nov;47(11):922-9. doi: 10.1016/j.fgb.2010.07.005. Epub 2010 Jul 15.
PMID: 20637887

Genetic and molecular characterization of a cryptochrome from the filamentous fungus Neurospora crassa.
Froehlich AC, Chen CH, Belden WJ, Madeti C, Roenneberg T, Merrow M, Loros JJ, Dunlap JC
Eukaryot Cell. 2010 May;9(5):738-50. doi: 10.1128/EC.00380-09. Epub 2010 Mar 19.
PMID: 20305004

High-throughput construction of gene deletion cassettes for generation of Neurospora crassa knockout strains.
Collopy PD, Colot HV, Park G, Ringelberg C, Crew CM, Borkovich KA, Dunlap JC
Methods Mol Biol. 2010;638:33-40. doi: 10.1007/978-1-60761-611-5_3.
PMID: 20238259

Circadian rhythms: phosphorylating the CLOCK.
Baker CL, Dunlap JC
Cell Cycle. 2010 Jan 15;9(2):231-2. Epub 2010 Jan 15.
PMID: 20061797

FRQ-interacting RNA helicase mediates negative and positive feedback in the Neurospora circadian clock.
Shi M, Collett M, Loros JJ, Dunlap JC
Genetics. 2010 Feb;184(2):351-61. doi: 10.1534/genetics.109.111393. Epub 2009 Nov 30.
PMID: 19948888

Neurospora sees the light: light signaling components in a model system.
Chen CH, Loros JJ
Commun Integr Biol. 2009 Sep;2(5):448-51.
PMID: 19907715

Retinoic acid mediates long-paced oscillations in retinoid receptor activity: evidence for a potential role for RIP140.
Heim KC, Gamsby JJ, Hever MP, Freemantle SJ, Loros JJ, Dunlap JC, Spinella MJ
PLoS One. 2009 Oct 28;4(10):e7639. doi: 10.1371/journal.pone.0007639. Epub 2009 Oct 28.
PMID: 19862326

Post-translational modifications in circadian rhythms.
Mehra A, Baker CL, Loros JJ, Dunlap JC
Trends Biochem Sci. 2009 Oct;34(10):483-90. doi: 10.1016/j.tibs.2009.06.006. Epub 2009 Sep 7.
PMID: 19740663

A phylogenetically conserved DNA damage response resets the circadian clock.
Gamsby JJ, Loros JJ, Dunlap JC
J Biol Rhythms. 2009 Jun;24(3):193-202. doi: 10.1177/0748730409334748.
PMID: 19465696

Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock.
Baker CL, Kettenbach AN, Loros JJ, Gerber SA, Dunlap JC
Mol Cell. 2009 May 15;34(3):354-63. doi: 10.1016/j.molcel.2009.04.023.
PMID: 19450533

A role for casein kinase 2 in the mechanism underlying circadian temperature compensation.
Mehra A, Shi M, Baker CL, Colot HV, Loros JJ, Dunlap JC
Cell. 2009 May 15;137(4):749-60. doi: 10.1016/j.cell.2009.03.019.
PMID: 19450520

Fungal functional genomics: tunable knockout-knock-in expression and tagging strategies.
Larrondo LF, Colot HV, Baker CL, Loros JJ, Dunlap JC
Eukaryot Cell. 2009 May;8(5):800-4. doi: 10.1128/EC.00072-09. Epub 2009 Mar 13.
PMID: 19286985

Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora.
Chen CH, Ringelberg CS, Gross RH, Dunlap JC, Loros JJ
EMBO J. 2009 Apr 22;28(8):1029-42. doi: 10.1038/emboj.2009.54. Epub 2009 Mar 5.
PMID: 19262566

A role for Id2 in regulating photic entrainment of the mammalian circadian system.
Duffield GE, Watson NP, Mantani A, Peirson SN, Robles-Murguia M, Loros JJ, Israel MA, Dunlap JC
Curr Biol. 2009 Feb 24;19(4):297-304. doi: 10.1016/j.cub.2008.12.052. Epub 2009 Feb 12.
PMID: 19217292

A high-density single nucleotide polymorphism map for Neurospora crassa.
Lambreghts R, Shi M, Belden WJ, Decaprio D, Park D, Henn MR, Galagan JE, Basturkmen M, Birren BW, Sachs MS, Dunlap JC, Loros JJ
Genetics. 2009 Feb;181(2):767-81. doi: 10.1534/genetics.108.089292. Epub 2008 Nov 17.
PMID: 19015548

Closing the circadian negative feedback loop: FRQ-dependent clearance of WC-1 from the nucleus.
Hong CI, Ruoff P, Loros JJ, Dunlap JC
Genes Dev. 2008 Nov 15;22(22):3196-204. doi: 10.1101/gad.1706908. Epub 2008 Nov 7.
PMID: 18997062

SIRT1 is a circadian deacetylase for core clock components.
Belden WJ, Dunlap JC
Cell. 2008 Jul 25;134(2):212-4. doi: 10.1016/j.cell.2008.07.010.
PMID: 18662537

Salad days in the rhythms trade.
Dunlap JC
Genetics. 2008 Jan;178(1):1-13. doi: 10.1534/genetics.104.86496.
PMID: 18202353

A developmental cycle masks output from the circadian oscillator under conditions of choline deficiency in Neurospora.
Shi M, Larrondo LF, Loros JJ, Dunlap JC
Proc Natl Acad Sci U S A. 2007 Dec 11;104(50):20102-7. Epub 2007 Dec 4.
PMID: 18056807

Long and short isoforms of Neurospora clock protein FRQ support temperature-compensated circadian rhythms.
Diernfellner A, Colot HV, Dintsis O, Loros JJ, Dunlap JC, Brunner M
FEBS Lett. 2007 Dec 22;581(30):5759-64. Epub 2007 Nov 26.
PMID: 18037381

Simulating dark expressions and interactions of frq and wc-1 in the Neurospora circadian clock.
Hong CI, Jolma IW, Loros JJ, Dunlap JC, Ruoff P
Biophys J. 2008 Feb 15;94(4):1221-32. Epub 2007 Oct 26.
PMID: 17965132

Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock.
Gooch VD, Mehra A, Larrondo LF, Fox J, Touroutoutoudis M, Loros JJ, Dunlap JC
Eukaryot Cell. 2008 Jan;7(1):28-37. Epub 2007 Aug 31.
PMID: 17766461

The band mutation in Neurospora crassa is a dominant allele of ras-1 implicating RAS signaling in circadian output.
Belden WJ, Larrondo LF, Froehlich AC, Shi M, Chen CH, Loros JJ, Dunlap JC
Genes Dev. 2007 Jun 15;21(12):1494-505.
PMID: 17575051

Conformational switching in the fungal light sensor Vivid.
Zoltowski BD, Schwerdtfeger C, Widom J, Loros JJ, Bilwes AM, Dunlap JC, Crane BR
Science. 2007 May 18;316(5827):1054-7.
PMID: 17510367

The novel ER membrane protein PRO41 is essential for sexual development in the filamentous fungus Sordaria macrospora.
Nowrousian M, Frank S, Koers S, Strauch P, Weitner T, Ringelberg C, Dunlap JC, Loros JJ, Kuck U
Mol Microbiol. 2007 May;64(4):923-37.
PMID: 17501918

Enabling a community to dissect an organism: overview of the Neurospora functional genomics project.
Dunlap JC, Borkovich KA, Henn MR, Turner GE, Sachs MS, Glass NL, McCluskey K, Plamann M, Galagan JE, Birren BW, Weiss RL, Townsend JP, Loros JJ, Nelson MA, Lambreghts R, Colot HV, Park G, Collopy P, Ringelberg C, Crew C, Litvinkova L, DeCaprio D, Hood HM, Curilla S, Shi M, Crawford M, Koerhsen M, Montgomery P, Larson L, Pearson M, Kasuga T, Tian C, Başturkmen M, Altamirano L, Xu J
Adv Genet. 2007;57:49-96.
PMID: 17352902

Execution of the circadian negative feedback loop in Neurospora requires the ATP-dependent chromatin-remodeling enzyme CLOCKSWITCH.
Belden WJ, Loros JJ, Dunlap JC
Mol Cell. 2007 Feb 23;25(4):587-600.
PMID: 17317630

How fungi keep time: circadian system in Neurospora and other fungi.
Dunlap JC, Loros JJ
Curr Opin Microbiol. 2006 Dec;9(6):579-87. Epub 2006 Oct 24.
PMID: 17064954

CLOCK leaves its mark on histones.
Belden WJ, Loros JJ, Dunlap JC
Trends Biochem Sci. 2006 Nov;31(11):610-3. Epub 2006 Oct 5.
PMID: 17027273

Proteins in the Neurospora circadian clockworks.
Dunlap JC
J Biol Chem. 2006 Sep 29;281(39):28489-93. Epub 2006 Aug 11.
PMID: 16905532

Circadian rhythmicity by autocatalysis.
Mehra A, Hong CI, Shi M, Loros JJ, Dunlap JC, Ruoff P
PLoS Comput Biol. 2006 Jul 28;2(7):e96. Epub 2006 Jun 8.
PMID: 16863394

The Neurospora checkpoint kinase 2: a regulatory link between the circadian and cell cycles.
Pregueiro AM, Liu Q, Baker CL, Dunlap JC, Loros JJ
Science. 2006 Aug 4;313(5787):644-9. Epub 2006 Jun 29.
PMID: 16809488

A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors.
Colot HV, Park G, Turner GE, Ringelberg C, Crew CM, Litvinkova L, Weiss RL, Borkovich KA, Dunlap JC
Proc Natl Acad Sci U S A. 2006 Jul 5;103(27):10352-7. Epub 2006 Jun 26.
PMID: 16801547

Physiology. Running a clock requires quality time together.
Dunlap JC
Science. 2006 Jan 13;311(5758):184-6.
PMID: 16410512

Genetic and molecular analysis of phytochromes from the filamentous fungus Neurospora crassa.
Froehlich AC, Noh B, Vierstra RD, Loros J, Dunlap JC
Eukaryot Cell. 2005 Dec;4(12):2140-52.
PMID: 16339731

The relationship between FRQ-protein stability and temperature compensation in the Neurospora circadian clock.
Ruoff P, Loros JJ, Dunlap JC
Proc Natl Acad Sci U S A. 2005 Dec 6;102(49):17681-6. Epub 2005 Nov 28.
PMID: 16314576

The PAS/LOV protein VIVID supports a rapidly dampened daytime oscillator that facilitates entrainment of the Neurospora circadian clock.
Elvin M, Loros JJ, Dunlap JC, Heintzen C
Genes Dev. 2005 Nov 1;19(21):2593-605.
PMID: 16264193

Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequency.
Colot HV, Loros JJ, Dunlap JC
Mol Biol Cell. 2005 Dec;16(12):5563-71. Epub 2005 Sep 29.
PMID: 16195340

Analysis of circadian output rhythms of gene expression in Neurospora and mammalian cells in culture.
Duffield G, Loros JJ, Dunlap JC
Methods Enzymol. 2005;393:315-41.
PMID: 15817297

Analysis of circadian rhythms in Neurospora: overview of assays and genetic and molecular biological manipulation.
Dunlap JC, Loros JJ
Methods Enzymol. 2005;393:3-22.
PMID: 15817284

Cross-species microarray hybridization to identify developmentally regulated genes in the filamentous fungus Sordaria macrospora.
Nowrousian M, Ringelberg C, Dunlap JC, Loros JJ, Kuck U
Mol Genet Genomics. 2005 Apr;273(2):137-49. Epub 2005 Mar 19.
PMID: 15778868

Assignment of an essential role for the Neurospora frequency gene in circadian entrainment to temperature cycles.
Pregueiro AM, Price-Lloyd N, Bell-Pedersen D, Heintzen C, Loros JJ, Dunlap JC
Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):2210-5. Epub 2005 Jan 26.
PMID: 15677317

The neurospora circadian system.
Dunlap JC, Loros JJ
J Biol Rhythms. 2004 Oct;19(5):414-24.
PMID: 15534321

A nitrate-induced frq-less oscillator in Neurospora crassa.
Christensen MK, Falkeid G, Loros JJ, Dunlap JC, Lillo C, Ruoff P
J Biol Rhythms. 2004 Aug;19(4):280-6.
PMID: 15245647

Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism.
Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, Read ND, Seiler S, Bell-Pedersen D, Paietta J, Plesofsky N, Plamann M, Goodrich-Tanrikulu M, Schulte U, Mannhaupt G, Nargang FE, Radford A, Selitrennikoff C, Galagan JE, Dunlap JC, Loros JJ, Catcheside D, Inoue H, Aramayo R, Polymenis M, Selker EU, Sachs MS, Marzluf GA, Paulsen I, Davis R, Ebbole DJ, Zelter A, Kalkman ER, O'Rourke R, Bowring F, Yeadon J, Ishii C, Suzuki K, Sakai W, Pratt R
Microbiol Mol Biol Rev. 2004 Mar;68(1):1-108.
PMID: 15007097

Kinases and circadian clocks: per goes it alone.
Dunlap JC
Dev Cell. 2004 Feb;6(2):160-1.
PMID: 14960268

The molecular workings of the Neurospora biological clock.
Froehlich AC, Pregueiro A, Lee K, Denault D, Colot H, Nowrousian M, Loros JJ, Dunlap JC
Novartis Found Symp. 2003;253:184-98; discussion 102-9, 198-202, 281-4.
PMID: 14712922

The frequency gene is required for temperature-dependent regulation of many clock-controlled genes in Neurospora crassa.
Nowrousian M, Duffield GE, Loros JJ, Dunlap JC
Genetics. 2003 Jul;164(3):923-33.
PMID: 12871904

Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY.
Froehlich AC, Loros JJ, Dunlap JC
Proc Natl Acad Sci U S A. 2003 May 13;100(10):5914-9. Epub 2003 Apr 24.
PMID: 12714686

Role for antisense RNA in regulating circadian clock function in Neurospora crassa.
Kramer C, Loros JJ, Dunlap JC, Crosthwaite SK
Nature. 2003 Feb 27;421(6926):948-52.
PMID: 12607002

Roles for WHITE COLLAR-1 in circadian and general photoperception in Neurospora crassa.
Lee K, Dunlap JC, Loros JJ
Genetics. 2003 Jan;163(1):103-14.
PMID: 12586700

Neurospora clock-controlled gene 9 (ccg-9) encodes trehalose synthase: circadian regulation of stress responses and development.
Shinohara ML, Correa A, Bell-Pedersen D, Dunlap JC, Loros JJ
Eukaryot Cell. 2002 Feb;1(1):33-43.
PMID: 12455969

Homology effects: the difference between 1 and 2.
Wu CT, Dunlap JC
Adv Genet. 2002;46:xvii-xxiii.
PMID: 12136788

White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter.
Froehlich AC, Liu Y, Loros JJ, Dunlap JC
Science. 2002 Aug 2;297(5582):815-9. Epub 2002 Jul 4.
PMID: 12098706

Circadian programs of transcriptional activation, signaling, and protein turnover revealed by microarray analysis of mammalian cells.
Duffield GE, Best JD, Meurers BH, Bittner A, Loros JJ, Dunlap JC
Curr Biol. 2002 Apr 2;12(7):551-7.
PMID: 11937023

Light and clock expression of the Neurospora clock gene frequency is differentially driven by but dependent on WHITE COLLAR-2.
Collett MA, Garceau N, Dunlap JC, Loros JJ
Genetics. 2002 Jan;160(1):149-58.
PMID: 11805052